priyatham/compara-deep-learning
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HarshitGupta11 2019-06-26 20:53:49 +05:30 committed by GitHub
parent 3a3488bbf2
commit ea37c29761
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1 changed files with 2 additions and 2 deletions
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4
create_synteny_matrix.py
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@ -10,7 +10,7 @@ from skbio import DNA,TabularMSA,RNA
def update(gene_seq,gene): def update(gene_seq,gene):
t=0 t=0
while(t!=100): while(t!=10):
try: try:
server = "https://rest.ensembl.org" server = "https://rest.ensembl.org"
ext = "/sequence/id/"+str(gene)+"?type=cds;multiple_sequences=1" ext = "/sequence/id/"+str(gene)+"?type=cds;multiple_sequences=1"
@ -38,7 +38,7 @@ def update(gene_seq,gene):
return return
except Exception as e: except Exception as e:
t+=1 t+=1
print("\nError:",e) #print("\nError:",e)
continue continue
gene_seq[gene]="" gene_seq[gene]=""