diff --git a/create_synteny_matrix.py b/create_synteny_matrix.py index 0fe8370..dd795eb 100644 --- a/create_synteny_matrix.py +++ b/create_synteny_matrix.py @@ -10,7 +10,7 @@ from skbio import DNA,TabularMSA,RNA def update(gene_seq,gene): t=0 - while(t!=100): + while(t!=10): try: server = "https://rest.ensembl.org" ext = "/sequence/id/"+str(gene)+"?type=cds;multiple_sequences=1" @@ -38,7 +38,7 @@ def update(gene_seq,gene): return except Exception as e: t+=1 - print("\nError:",e) + #print("\nError:",e) continue gene_seq[gene]=""