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@ -59,7 +59,7 @@ The idea is that homologous genes will have overlapping domains. Run the hmmer s
**Parse the PFAm domain files:**<br/> **Parse the PFAm domain files:**<br/>
This file will parse the hmmer scan database. You will have to parse both the positive samples and the negative sample database.<br/> This file will parse the hmmer scan database. You will have to parse both the positive samples and the negative sample database.<br/>
To parse, run:<br/> To parse, run:<br/>
`python pfam_parser.py domtblout_file_name_positive domtblout_file_name_negative`. `python pfam_parser.py domtblout_file_name_positive domtblout_file_name_negative`
**Create PFAM matrices:**<br/> **Create PFAM matrices:**<br/>
This step will create the pfam matrices. This might take some time...<br/> This step will create the pfam matrices. This might take some time...<br/>