diff --git a/README.md b/README.md index d387283..3e64815 100644 --- a/README.md +++ b/README.md @@ -59,7 +59,7 @@ The idea is that homologous genes will have overlapping domains. Run the hmmer s **Parse the PFAm domain files:**
This file will parse the hmmer scan database. You will have to parse both the positive samples and the negative sample database.
To parse, run:
-`python pfam_parser.py domtblout_file_name_positive domtblout_file_name_negative`. +`python pfam_parser.py domtblout_file_name_positive domtblout_file_name_negative` **Create PFAM matrices:**
This step will create the pfam matrices. This might take some time...