priyatham/compara-deep-learning
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HarshitGupta11 2019-06-13 17:56:40 +05:30 committed by GitHub
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prepare_data.py
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@ -3,6 +3,7 @@ import numpy as np
import pandas as pd import pandas as pd
import json import json
import os import os
import gc
from get_data import get_data_homology,get_data_genome from get_data import get_data_homology,get_data_genome
from process_data import create_data_homology_ls from process_data import create_data_homology_ls
from read_get_gene_seq import read_gene_sequences from read_get_gene_seq import read_gene_sequences
@ -46,9 +47,15 @@ if enable_break==1:
else: else:
save_after=1000000 save_after=1000000
lsy=create_data_homology_ls(a_h,d_h,n,a,d,ld,ldg,save_after,enable_break) lsy=create_data_homology_ls(a_h,d_h,n,a,d,ld,ldg,save_after,enable_break,0)
print(len(lsy)) print(len(lsy))
a=[]
d=[]
ld=[]
ldg=[]
gc.collect()
print("Neighbor Genes Found") print("Neighbor Genes Found")
if enable_break==1: if enable_break==1: