diff --git a/prepare_data.py b/prepare_data.py index b5ea833..3f41ecc 100644 --- a/prepare_data.py +++ b/prepare_data.py @@ -3,6 +3,7 @@ import numpy as np import pandas as pd import json import os +import gc from get_data import get_data_homology,get_data_genome from process_data import create_data_homology_ls from read_get_gene_seq import read_gene_sequences @@ -46,9 +47,15 @@ if enable_break==1: else: save_after=1000000 -lsy=create_data_homology_ls(a_h,d_h,n,a,d,ld,ldg,save_after,enable_break) +lsy=create_data_homology_ls(a_h,d_h,n,a,d,ld,ldg,save_after,enable_break,0) print(len(lsy)) +a=[] +d=[] +ld=[] +ldg=[] +gc.collect() + print("Neighbor Genes Found") if enable_break==1: