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Removed unintended breaks

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HarshitGupta11 2019-06-03 14:54:44 +05:30 committed by GitHub
parent 32529df3a0
commit 0ec99556d1
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2 changed files with 4 additions and 4 deletions
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4
create_synteny_matrix.py
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@ -56,7 +56,7 @@ def create_synteny_matrix_mul(gene_seq,g1,g2,n):
sml[i][j][1]=result/(norm_len) sml[i][j][1]=result/(norm_len)
return sm,sml return sm,sml
def synteny_matrix(gene_seq,hdf,lsy,n): def synteny_matrix(gene_seq,hdf,lsy,n,enable_break):
sg=[] sg=[]
sl=[] sl=[]
t=0 t=0
@ -91,7 +91,7 @@ def synteny_matrix(gene_seq,hdf,lsy,n):
sl.append(smltemp) sl.append(smltemp)
ind.append(index) ind.append(index)
t+=1 t+=1
if t==5: if t==5 and enable_break==1:
break break
end=time.time() end=time.time()
print("Time Taken:",end-start) print("Time Taken:",end-start)

4
prepare_data.py
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@ -57,9 +57,9 @@ else:
gene_sequences=read_gene_sequences(a_h[0],lsy,"geneseq","gene_sequences") gene_sequences=read_gene_sequences(a_h[0],lsy,"geneseq","gene_sequences")
if enable_break==1: if enable_break==1:
synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0][0:10],lsy,n) synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0][0:10],lsy,n,enable_break)
else: else:
synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0],lsy,n) synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0],lsy,n,enable_break)
print("Synteny Matrices are created successfully\n",len(indexes),"\n",len(synteny_matrices_global)) print("Synteny Matrices are created successfully\n",len(indexes),"\n",len(synteny_matrices_global))
np.save("processed/synteny_matrices_global",synteny_matrices_global) np.save("processed/synteny_matrices_global",synteny_matrices_global)