From 0ec99556d1d1f2fc4149c309587f878df577e408 Mon Sep 17 00:00:00 2001
From: HarshitGupta11 <50410275+HarshitGupta11@users.noreply.github.com>
Date: Mon, 3 Jun 2019 14:54:44 +0530
Subject: [PATCH] Removed unintended breaks

---
 create_synteny_matrix.py | 4 ++--
 prepare_data.py          | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/create_synteny_matrix.py b/create_synteny_matrix.py
index eff7d6d..cbc0f11 100644
--- a/create_synteny_matrix.py
+++ b/create_synteny_matrix.py
@@ -56,7 +56,7 @@ def create_synteny_matrix_mul(gene_seq,g1,g2,n):
             sml[i][j][1]=result/(norm_len)
     return sm,sml
 
-def synteny_matrix(gene_seq,hdf,lsy,n):
+def synteny_matrix(gene_seq,hdf,lsy,n,enable_break):
     sg=[]
     sl=[]
     t=0
@@ -91,7 +91,7 @@ def synteny_matrix(gene_seq,hdf,lsy,n):
         sl.append(smltemp)
         ind.append(index)
         t+=1
-        if t==5:
+        if t==5 and enable_break==1:
             break
     end=time.time()
     print("Time Taken:",end-start)
diff --git a/prepare_data.py b/prepare_data.py
index 3b991cd..b5ea833 100644
--- a/prepare_data.py
+++ b/prepare_data.py
@@ -57,9 +57,9 @@ else:
     gene_sequences=read_gene_sequences(a_h[0],lsy,"geneseq","gene_sequences")
 
 if enable_break==1:
-    synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0][0:10],lsy,n)
+    synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0][0:10],lsy,n,enable_break)
 else:    
-    synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0],lsy,n)
+    synteny_matrices_global,synteny_matrices_local,indexes=synteny_matrix(gene_sequences,a_h[0],lsy,n,enable_break)
 
 print("Synteny Matrices are created successfully\n",len(indexes),"\n",len(synteny_matrices_global))
 np.save("processed/synteny_matrices_global",synteny_matrices_global)