priyatham/compara-deep-learning
1
0
Fork 0
mirror of https://github.com/Priyatham-sai-chand/compara-deep-learning.git synced 2026-10-05 08:11:34 -07:00
Code Issues Projects Releases Packages Wiki Activity Actions

Removed Errors in Reading FastA Files

Browse source
This commit is contained in:
HarshitGupta11 2019-06-05 13:51:31 +05:30 committed by GitHub
parent 0ec99556d1
commit d0e320059a
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 8 additions and 6 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

14
read_get_gene_seq.py
View file

@ -95,12 +95,14 @@ def read_gene_sequences(df,lsy,data_dir,fname):
if gxr not in gene_by_species_dict[species]:
gene_by_species_dict[species].append(gxr)
s=[x for x in gene_by_species_dict if len(gene_by_species_dict[x])!=0]#select those species only whose gene sequences we have to read.
s=[x.capitalize() for x in s]
s=[x for x in gene_by_species_dict if len(gene_by_species_dict[x])!=0]#select those species only whose gene sequences we have to read.
s=[x.capitalize() for x in s]
data=read_gene_seq(data_dir,s,gene_by_species_dict)
print(len(s))
with open("processed/"+fname+".json","w") as file:#save the data
json.dump(data,file)
data=read_gene_seq(data_dir,s,gene_by_species_dict)
return data
with open("processed/"+fname+".json","w") as file:#save the data
json.dump(data,file)
return data