priyatham/compara-deep-learning
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HarshitGupta11 2019-08-30 20:28:51 +05:30 committed by GitHub
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pfam_matrix.py
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@ -113,7 +113,7 @@ def read_data_negative(arg):
df=df.loc[ind] df=df.loc[ind]
pfam_db=pd.read_hdf("pfam_db_negative.h5") pfam_db=pd.read_hdf("pfam_db_negative.h5")
pfam_map=create_pfam_map(pfam_db) pfam_map=create_pfam_map(pfam_db)
with open("processed/neighbor_genes_"+name+".json","r") as file: with open("processed/neighbor_genes_negative.json","r") as file:
lsy=dict(json.load(file)) lsy=dict(json.load(file))
return df,pfam_db,pfam_map,lsy,name return df,pfam_db,pfam_map,lsy,name