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@ -34,7 +34,7 @@ To select the data run:<br/>
**Find the Neighbor Genees of the Selected Records:**<br/> **Find the Neighbor Genees of the Selected Records:**<br/>
This step will find the neighbor genes of all the selected records from the homology databases and write it to the `processed` directory.<br/> This step will find the neighbor genes of all the selected records from the homology databases and write it to the `processed` directory.<br/>
Run:<br/> Run:<br/>
`python neighbor_gene.py`<br/> `python neighbor_genes.py`<br/>
**Create Synteny Matrix and Write Protein Sequences:**<br/> **Create Synteny Matrix and Write Protein Sequences:**<br/>
This step will create the synteny matrices and write the protein sequences on a `FAST-A` file named `protein_seq_positive.fa`.You will have to run the `hmmer-scan` on this file to get the `PFAm` domains.<br/> This step will create the synteny matrices and write the protein sequences on a `FAST-A` file named `protein_seq_positive.fa`.You will have to run the `hmmer-scan` on this file to get the `PFAm` domains.<br/>