diff --git a/get_data.py b/get_data.py deleted file mode 100644 index 2691d81..0000000 --- a/get_data.py +++ /dev/null @@ -1,50 +0,0 @@ -import sys -import os -from req_data import get_data_file,download_data -from read_data import read_data_genome,read_data_homology -from process_data import list_dict_genomes - -def get_data_genome(arg,dir,a,d,ld,ldg): - if arg[0]=='-d': - if arg[4]=="-r": - c=0 - else: - return a,d,ld,ldg - elif arg[0]=='-f': - get_data_file(arg[1],dir) - elif arg[0]=="-nd": - return ld,ldg,a,d - - if arg[4]=="-r": - a,d=read_data_genome(dir,a,d) - assert(len(a)==len(d)) - - ld,ldg=list_dict_genomes(a,d) - - assert(len(ld)==len(ldg)) - - for i in range(len(ld)): - assert(len(ld[i])==len(ldg[i])) - - return ld,ldg,a,d - -def get_data_homology(arg,dir,a_h,d_h): - if arg[2]=="-l": - if not os.path.exists(dir): - os.mkdir(dir) - download_data(arg[3],dir) - elif arg[2]=="-f": - get_data_file(arg[3],dir) - elif arg[2]=="-d": - if arg[4]=="-r": - c=0 - else: - return a_h,d_h - elif arg[2]=="-nd": - return a_h,d_h - - if arg[4]=="-r": - a_h,d_h=read_data_homology(dir,a_h,d_h) - assert(len(a_h)==len(d_h)) - - return a_h,d_h