From 17aca57bb68ae26e708f2466185d4b4e222dab81 Mon Sep 17 00:00:00 2001
From: HarshitGupta11 <50410275+HarshitGupta11@users.noreply.github.com>
Date: Wed, 24 Jul 2019 15:56:33 +0530
Subject: [PATCH] Delete read_data.py

---
 read_data.py | 51 ---------------------------------------------------
 1 file changed, 51 deletions(-)
 delete mode 100644 read_data.py

diff --git a/read_data.py b/read_data.py
deleted file mode 100644
index 2211bc8..0000000
--- a/read_data.py
+++ /dev/null
@@ -1,51 +0,0 @@
-import os
-import pandas as pd
-import gzip
-import sys
-
-def clear_data(x):
-    x=x.split()
-    try:
-        x=x[1]
-    except:
-        c=0
-        #print(x)
-    x=x[1:-1]
-    return x
-
-def read_data_genome(dir_name,a,dict_ind_genome):
-    lf=os.listdir(dir_name)
-    if len(lf)==0:
-        print("No files in the data directory!!!!!!")
-        sys.exit(1)
-    for x in lf:
-
-        data_gene=pd.read_csv(dir_name+"/"+x,compression='gzip',sep='\t',comment='#',header=None)
-        #print(data_gene.head)
-        data_gene=data_gene[data_gene[2]=="gene"]
-        data_gene=data_gene.sort_values(3)
-        tmp=data_gene[8].str.split(";",expand=True)
-        tmp=tmp.iloc[:,:5]
-        data_gene[["gene_id","gene_version","gene_name","gene_source","gene_biotype"]]=tmp
-        data_gene=data_gene.drop(8,axis=1)
-        #print(data_gene[0:10])
-        for y in ["gene_version","gene_name","gene_source","gene_biotype","gene_id"]:
-            data_gene[y]=data_gene[y].apply(clear_data)
-        #print(data_gene[0:10])
-        data_gene=data_gene[data_gene['gene_biotype']=='protein_coding']
-        a.append(data_gene)
-        n=x.split(".")[0]
-        dict_ind_genome[n]=len(a)-1
-    return a,dict_ind_genome
-
-def read_data_homology(dir,a_h,d_h):
-    lf=os.listdir(dir)
-    if len(lf)==0:
-        print("No Files in the Directory!!!!!!!")
-        sys.exit(1)
-    for x in lf:
-        data=pd.read_csv(dir+"/"+x,compression='gzip',sep='\t')
-        a_h.append(data)
-        n=x.split(".")[0]
-        d_h[n]=len(a_h)-1
-    return a_h,d_h