From 065edae0335170e975eb46df71630b819a9bd65a Mon Sep 17 00:00:00 2001
From: HarshitGupta11 <50410275+HarshitGupta11@users.noreply.github.com>
Date: Wed, 19 Jun 2019 12:03:09 +0530
Subject: [PATCH] Delete main.py

---
 main.py | 53 -----------------------------------------------------
 1 file changed, 53 deletions(-)
 delete mode 100644 main.py

diff --git a/main.py b/main.py
deleted file mode 100644
index 47d56e2..0000000
--- a/main.py
+++ /dev/null
@@ -1,53 +0,0 @@
-import sys
-import numpy as np
-import pandas as pd
-import json
-from get_data import get_data_homology,get_data_genome
-from process_data import create_data_homology_ls
-from read_get_gene_seq import read_gene_sequences
-from create_synteny_matrix import synteny_matrix
-from tree_data import create_tree_data
-from create_train_data import train_data
-from train import train
-
-arg=sys.argv
-arg=arg[1:]
-
-if len(arg)!=5:
-    print("No. of arguments more or less. Please check")
-    sys.exit(1)
-
-dir_g="data"
-ld,ldg,a,d=get_data_genome(arg,dir_g)
-
-dir_hom="data_homology"
-a_h,d_h=get_data_homology(arg,dir_hom)
-
-if arg[-1]=="-d":
-    sys.exit(1)
-
-print("Data Read")
-
-n=2 #no. of numbers neighbors
-save_after=50000 #to save data after n steps
-lsy=create_data_homology_ls(a_h,d_h,n,a,d,ld,ldg,save_after)
-print(len(lsy))
-
-print("Neighbor Genes Found")
-
-gene_sequences=read_gene_sequences(a_h[0],lsy,"geneseq","gene_sequences")
-
-synteny_matrices,indexes=synteny_matrix(gene_sequences,a_h[0],lsy,n)
-print("Synteny Matrices are created successfully\n",len(indexes),"\n",len(synteny_matrices))
-np.save("synteny_matrices",synteny_matrices)
-np.save("indexes",indexes)
-
-with open("gene_seq_updated.json","w") as file:
-    json.dump(gene_sequences,file)
-
-df=a_h[0].loc[indexes]
-branch_length_species,branch_length_homology_species,distance,dist_p_s,dist_p_hs=create_tree_data("species_tree.tree",df)
-
-train_synteny_matrices,train_branch_length_species,train_branch_length_homology_species,train_mean_gene_length,train_dist_p_s,train_dist_p_hs,train_distance,train_labels=train_data(indexes,synteny_matrices,df,branch_length_species,branch_length_homology_species,distance,dist_p_s,dist_p_hs,gene_sequences)
-
-train(train_synteny_matrices,train_branch_length_species,train_branch_length_homology_species,train_mean_gene_length,train_dist_p_s,train_dist_p_hs,train_distance,train_labels)