compara-deep-learning/species_tree.tree

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2019-07-24 03:27:54 -07:00
(saccharomyces_cerevisiae:0.12053,(((ciona_intestinalis:0.151113,ciona_savignyi:0.154677)1:0.0327515,((eptatretus_burgeri:0.128378,petromyzon_marinus:0.169182)1:0.00095149,((lepisosteus_oculatus:0.156711,((scleropages_formosus:0.116055,paramormyrops_kingsleyae:0.119385)1:0.0152653,((((astyanax_mexicanus:0.0831834,pygocentrus_nattereri:0.0898266)1:0.0199602,ictalurus_punctatus:0.10061)1:0.00963079,danio_rerio:0.110582)1:0.00197338,(esox_lucius:0.130765,(gadus_morhua:0.117116,(periophthalmus_magnuspinnatus:0.114713,(hippocampus_comes:0.114444,(((gasterosteus_aculeatus:0.103752,labrus_bergylta:0.0866677)1:0.00446595,((tetraodon_nigroviridis:0.0674859,takifugu_rubripes:0.0744041)1:0.0351015,mola_mola:0.0978235)1:0.00229189)1:0.00589275,((((cynoglossus_semilaevis:0.0954686,scophthalmus_maximus:0.100441)1:0.0001,(seriola_lalandi_dorsalis:0.0127928,seriola_dumerili:0.0127672)1:0.0693065)1:0.0001,((mastacembelus_armatus:0.0748029,monopterus_albus:0.0860571)1:0.00345198,anabas_testudineus:0.078993)1:0.0110165)1:0.0121107,(((((amphiprion_ocellaris:0.00675482,amphiprion_percula:0.00552518)1:0.0268836,acanthochromis_polyacanthus:0.0400714)1:0.0212642,stegastes_partitus:0.0517763)1:0.0269893,(amphilophus_citrinellus:0.0553949,(oreochromis_niloticus:0.0230128,(neolamprologus_brichardi:0.0155877,(((astatotilapia_calliptera:0.00237541,maylandia_zebra:0.00222459)1:0.000515714,pundamilia_nyererei:0.00887929)1:0.000673283,haplochromis_burtoni:0.00746981)1:0.00820467)1:0.0105078)1:0.0381336)1:0.0211695)1:0.0181227,((((oryzias_latipes_hni:0.0165617,oryzias_latipes:0.0147983)1:0.00102726,oryzias_latipes_hsok:0.0171027)1:0.0446085,oryzias_melastigma:0.0589057)1:0.0512701,(kryptolebias_marmoratus:0.0930933,((fundulus_heteroclitus:0.0803113,cyprinodon_variegatus:0.0838287)1:0.0001,(((xiphophorus_couchianus:0.0110953,xiphophorus_maculatus:0.00742472)1:0.0241526,gambusia_affinis:0.0308374)1:0.0098865,(poecilia_reticulata:0.0286208,(poecilia_mexicana:0.00793647,(poecilia_formosa:0.00521391,poecilia_latipinna:0.00440609)1:0.00198853)1:0.0163947)1:0.010153)1:0.043138)1:0.0137214)1:0.0121596)1:0.0001)1:0.0001)1:0.00168516)1:0.0151377)1:0.0017499)1:0.00383953)1:0.00032757)1:0.0116671)1:0.0001)1:0.00645315)1:0.0001,(latimeria_chalumnae:0.119274,(xenopus_tropicalis:0.14571,((ornithorhynchus_anatinus:0.127358,((((phascolarctos_cinereus:0.0589639,notamacropus_eugenii:0.0630161)1:0.0126856,sarcophilus_harrisii:0.0666494)1:0.00245254,monodelphis_domestica:0.0752439)1:0.0417722,((((loxodonta_africana:0.0624292,procavia_capensis:0.0761308)1:0.0167753,echinops_telfairi:0.0966547)1:0.019774,(dasypus_novemcinctus:0.0776558,choloepus_hoffmanni:0.0782942)1:0.0226792)1:0.00493446,(((erinaceus_europaeus:0.101031,sorex_araneus:0.107679)1:0.00110986,((((panthera_pardus:0.00386325,panthera_tigris_altaica:0.00452675)1:0.00752221,felis_catus:0.0116228)1:0.0534858,((((ursus_americanus:0.00367107,ursus_maritimus:0.00321893)1:0.0138769,ailuropoda_melanoleuca:0.0173581)1:0.0376917,(neovison_vison:0.0160509,mustela_putorius_furo:0.0160591)1:0.0386994)1:0.00641809,((canis_lupus_dingo:0.000945102,canis_familiaris:0.0013649)1:0.0104717,vulpes_vulpes:0.0119883)1:0.0472989)1:0.00602788)1:0.0163724,((pteropus_vampyrus:0.0800095,myotis_lucifugus:0.0826505)1:0.00681959,((((((capra_hircus:0.0112773,ovis_aries:0.0110627)1:0.0167979,((bos_mutus:0.00522287,bos_taurus:0.00464713)1:0.0001,bison_bison_bison:0.00477814)1:0.0226132)1:0.0437826,tursiops_truncatus:0.066084)1:0.0114156,sus_scrofa:0.075862)1:0.0001,vicugna_pacos:0.0815824)1:0.00472105,(equus_caballus:0.00639876,equus_asinus_asinus:0.00664124)1:0.0763951)1:0.00509347)1:0.0001)1:0.0158911)1:0.0001,((((((prolemur_simus:0.0371602,propithecus_coquereli:0.0381898)1:0.00515634,microcebus_murinus:0.0414087)1:0.0276342,otolemur_garnettii:0.0746654)1:0.00700933,(carlito_syrichta:0.0797062,((((saimiri_boliviensis_boliviensis:0.0262284,cebus_capucinus:0.0261016)1:0.00267284,callithrix_jacchus:0.0301072)1:0.0001,aotus_nancymaae:0.0251968)1:0.0236875,((((((pan_paniscus:0.00332066,pan_troglodytes:0.00221934)1:0.0043011,homo_sapiens:0.0066089)1: