mirror of
https://github.com/Priyatham-sai-chand/compara-deep-learning.git
synced 2026-10-05 08:11:34 -07:00
42 lines
888 B
Python
42 lines
888 B
Python
|
import sys
|
||
|
|
import numpy as np
|
||
|
|
import pandas as pd
|
||
|
|
import json
|
||
|
|
import os
|
||
|
|
import gc
|
||
|
|
from get_data import get_data_homology,get_data_genome
|
||
|
|
from process_data import create_data_homology_ls
|
||
|
|
|
||
|
|
if not os.path.exists("processed"):
|
||
|
|
os.mkdir("processed")
|
||
|
|
|
||
|
|
arg=sys.argv
|
||
|
|
arg=arg[1:]
|
||
|
|
|
||
|
|
enable_break=0
|
||
|
|
|
||
|
|
if arg[-1]=="-test":
|
||
|
|
enable_break=1
|
||
|
|
|
||
|
|
arg=arg[:-1]
|
||
|
|
|
||
|
|
if len(arg)!=5:
|
||
|
|
print("No. of arguments more or less. Please check")
|
||
|
|
sys.exit(1)
|
||
|
|
|
||
|
|
dir_g="data"
|
||
|
|
cmap,cimap,ld,ldg,a,d=get_data_genome(arg,dir_g)
|
||
|
|
|
||
|
|
df=pd.read_hdf("negative_dataset.h5",key="ndf")
|
||
|
|
a_h=[]
|
||
|
|
d_h=[]
|
||
|
|
a_h.append(df)
|
||
|
|
d_h.append("negative_dataset")
|
||
|
|
print("Data Read")
|
||
|
|
|
||
|
|
n=3 #no. of numbers neighbors
|
||
|
|
save_after=5 #to save data after n steps
|
||
|
|
|
||
|
|
lsy=create_data_homology_ls(a_h,d_h,n,a,d,ld,ldg,cmap,cimap,save_after,enable_break,1)
|
||
|
|
print(len(lsy))
|
||
|
|
print("Neighbor Genes Updated Successfully")
|